The Proteogenomic Mapping Tool

The Proteogenomic Mapping Tool provides experimentally-based structural annotations at a complete genome level.

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Current version(1.1) of the tool written in Java

• Readme

• Stand-alone executable jar file

• Netbeans project and source

• Sample and test data

• FindUniqueEpsts.pl

• pgm2augustus.sh -- converts Proteogenomic Mapping Tool gff output file to file suitable for Augustus hints file.

The Proteogenomic Mapping Tool source code
The most up-to-date source code is available at the project's Git repository https://bitbucket.org/bmmalone/proteogenomic-mapping

Citing The Proteogenomic Mapping Tool
Sanders, W. S., Wang, N., Bridges, S., Malone, B., Dandass, Y., McCarthy, F.M., Nanduri, B., Lawrence, M. L., & Burgess, S. (2011). The Proteogenomic Mapping Tool. BMC Bioinformatics. 12(1), 115.